IL_8YLD_042

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

8YLD|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_042 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.3985

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8YLD|1|2|G|867
8YLD|1|2|G|868
8YLD|1|2|A|869
*
8YLD|1|2|U|958
8YLD|1|2|U|959
8YLD|1|2|U|960
8YLD|1|2|U|961

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SY

Small ribosomal subunit protein uS15

Chain Sb

Small ribosomal subunit protein uS8A

Chain Sf

Small ribosomal subunit protein eS27A