IL_8YLD_044
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8YLD|1|2|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_044 not in the Motif Atlas
- Homologous match to IL_8P9A_420
- Geometric discrepancy: 0.1628
- The information below is about IL_8P9A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8YLD|1|2|C|874
8YLD|1|2|G|875
8YLD|1|2|G|876
8YLD|1|2|G|877
8YLD|1|2|G|878
*
8YLD|1|2|C|950
8YLD|1|2|A|951
8YLD|1|2|A|952
8YLD|1|2|G|953
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Se
- Small ribosomal subunit protein eS26A
- Chain e
- Large ribosomal subunit protein eL30
Coloring options: