IL_8YLD_074
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUCUAACC*GUAAUC
- Length
- 14 nucleotides
- Bulged bases
- 8YLD|1|2|U|1491, 8YLD|1|2|A|1516, 8YLD|1|2|U|1517
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_074 not in the Motif Atlas
- Homologous match to IL_8P9A_449
- Geometric discrepancy: 0.5574
- The information below is about IL_8P9A_449
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22564.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLD|1|2|G|1488
8YLD|1|2|U|1489
8YLD|1|2|C|1490
8YLD|1|2|U|1491
8YLD|1|2|A|1492
8YLD|1|2|A|1493
8YLD|1|2|C|1494
8YLD|1|2|C|1495
*
8YLD|1|2|G|1513
8YLD|1|2|U|1514
8YLD|1|2|A|1515
8YLD|1|2|A|1516
8YLD|1|2|U|1517
8YLD|1|2|C|1518
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
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