IL_8YLD_143
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_143 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.143
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8YLD|1|A|G|1444
8YLD|1|A|U|1445
8YLD|1|A|A|1446
8YLD|1|A|G|1447
8YLD|1|A|U|1448
8YLD|1|A|A|1449
8YLD|1|A|G|1450
*
8YLD|1|A|C|2354
8YLD|1|A|G|2355
8YLD|1|A|A|2356
8YLD|1|A|A|2357
8YLD|1|A|A|2358
8YLD|1|A|C|2359
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Large ribosomal subunit protein uL4A
- Chain R
- Large ribosomal subunit protein uL22A
Coloring options: