3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUAGUAG*CGAAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YLD_143 not in the Motif Atlas
Homologous match to IL_8C3A_065
Geometric discrepancy: 0.143
The information below is about IL_8C3A_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_76042.3
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

8YLD|1|A|G|1444
8YLD|1|A|U|1445
8YLD|1|A|A|1446
8YLD|1|A|G|1447
8YLD|1|A|U|1448
8YLD|1|A|A|1449
8YLD|1|A|G|1450
*
8YLD|1|A|C|2354
8YLD|1|A|G|2355
8YLD|1|A|A|2356
8YLD|1|A|A|2357
8YLD|1|A|A|2358
8YLD|1|A|C|2359

Current chains

Chain A
25S rRNA

Nearby chains

Chain C
5.8S ribosomal RNA; 5.8S rRNA
Chain F
Large ribosomal subunit protein uL4A
Chain R
Large ribosomal subunit protein uL22A

Coloring options:


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