IL_8YLD_184
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_184 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.1687
- The information below is about IL_8P9A_327
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8YLD|1|A|U|2718
8YLD|1|A|U|2719
8YLD|1|A|G|2720
8YLD|1|A|A|2721
*
8YLD|1|A|U|2735
8YLD|1|A|A|2736
8YLD|1|A|C|2737
8YLD|1|A|A|2738
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL18
- Chain S
- Large ribosomal subunit protein eL18A
- Chain V
- Large ribosomal subunit protein eL21A
- Chain d
- Large ribosomal subunit protein eL29
- Chain q
- Large ribosomal subunit protein eL42A
Coloring options: