IL_8YLD_194
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_194 not in the Motif Atlas
- Geometric match to IL_5TBW_475
- Geometric discrepancy: 0.1503
- The information below is about IL_5TBW_475
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28976.1
- Basepair signature
- cWW-L-cWW-cSH-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLD|1|A|C|2889
8YLD|1|A|A|2890
8YLD|1|A|U|2891
8YLD|1|A|A|2892
*
8YLD|1|A|U|2909
8YLD|1|A|A|2910
8YLD|1|A|A|2911
8YLD|1|A|G|2912
8YLD|1|A|C|2913
8YLD|1|A|G|2914
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain K
- Large ribosomal subunit protein uL6A
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain X
- Large ribosomal subunit protein uL14A
- Chain o
- Large ribosomal subunit protein eL40A
Coloring options: