IL_8YLD_201

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8YLD|1|A|U|3056, 8YLD|1|A|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_201 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.1717

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21001.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8YLD|1|A|U|3054
8YLD|1|A|U|3055
8YLD|1|A|U|3056
8YLD|1|A|U|3057
8YLD|1|A|U|3058
8YLD|1|A|G|3059
*
8YLD|1|A|C|3084
8YLD|1|A|G|3085
8YLD|1|A|A|3086
8YLD|1|A|A|3087
8YLD|1|A|G|3088

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Y

Large ribosomal subunit protein eL24A

Chain f

Large ribosomal subunit protein eL31A