IL_8YLD_226

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_226 not in the Motif Atlas

Homologous match to IL_8P9A_385

Geometric discrepancy: 0.3056

The information below is about IL_8P9A_385

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8YLD|1|2|C|186
8YLD|1|2|G|187
8YLD|1|2|A|188
8YLD|1|2|C|189
*
8YLD|1|2|G|196
8YLD|1|2|A|197
8YLD|1|2|A|198
8YLD|1|2|G|199

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A