IL_8YLR_003

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

8YLR|1|2|A|468

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_003 not in the Motif Atlas

Homologous match to IL_8C3A_394

Geometric discrepancy: 0.1256

The information below is about IL_8C3A_394

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8YLR|1|2|U|37
8YLR|1|2|C|38
8YLR|1|2|A|39
8YLR|1|2|A|40
8YLR|1|2|A|41
*
8YLR|1|2|U|466
8YLR|1|2|G|467
8YLR|1|2|A|468
8YLR|1|2|C|469
8YLR|1|2|A|470
8YLR|1|2|A|471

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SW

Small ribosomal subunit protein uS4A

Chain Sd

Small ribosomal subunit protein eS24A