IL_8YLR_011
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUAAC*GCUAAUA
- Length
- 13 nucleotides
- Bulged bases
- 8YLR|1|2|U|170
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_011 not in the Motif Atlas
- Geometric match to IL_4LFB_009
- Geometric discrepancy: 0.2327
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8YLR|1|2|U|144
8YLR|1|2|A|145
8YLR|1|2|U|146
8YLR|1|2|A|147
8YLR|1|2|A|148
8YLR|1|2|C|149
*
8YLR|1|2|G|165
8YLR|1|2|C|166
8YLR|1|2|U|167
8YLR|1|2|A|168
8YLR|1|2|A|169
8YLR|1|2|U|170
8YLR|1|2|A|171
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain Sd
- Small ribosomal subunit protein eS24A
- Chain Y
- Large ribosomal subunit protein eL24A
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