IL_8YLR_039

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_039 not in the Motif Atlas

Homologous match to IL_8C3A_431

Geometric discrepancy: 0.3077

The information below is about IL_8C3A_431

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8YLR|1|2|U|748
8YLR|1|2|U|749
8YLR|1|2|U|750
*
8YLR|1|2|A|799
8YLR|1|2|U|800
8YLR|1|2|G|801

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SU

Small ribosomal subunit protein eS7A

Chain SX

Small ribosomal subunit protein uS17A

Chain Sb

Small ribosomal subunit protein uS8A