IL_8YLR_048

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8YLR|1|2|G|913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_048 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.2506

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8YLR|1|2|U|893
8YLR|1|2|U|894
8YLR|1|2|G|895
8YLR|1|2|U|896
8YLR|1|2|C|897
8YLR|1|2|A|898
8YLR|1|2|G|899
*
8YLR|1|2|C|910
8YLR|1|2|U|911
8YLR|1|2|U|912
8YLR|1|2|G|913
8YLR|1|2|G|914
8YLR|1|2|A|915
8YLR|1|2|U|916
8YLR|1|2|U|917
8YLR|1|2|U|918
8YLR|1|2|A|919

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain SQ

Small ribosomal subunit protein eS1A

Chain SZ

Small ribosomal subunit protein uS11B