IL_8YLR_050
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_050 not in the Motif Atlas
- Geometric match to IL_8VTW_052
- Geometric discrepancy: 0.2602
- The information below is about IL_8VTW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22281.1
- Basepair signature
- cWW-L-R-tWW-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLR|1|2|C|990
8YLR|1|2|G|991
8YLR|1|2|A|992
8YLR|1|2|A|993
8YLR|1|2|G|994
*
8YLR|1|2|C|1010
8YLR|1|2|G|1011
8YLR|1|2|U|1012
8YLR|1|2|A|1013
8YLR|1|2|G|1014
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Se
- Small ribosomal subunit protein eS26A
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