IL_8YLR_063

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_063 not in the Motif Atlas

Homologous match to IL_8C3A_454

Geometric discrepancy: 0.3458

The information below is about IL_8C3A_454

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

8YLR|1|2|A|1234
8YLR|1|2|C|1235
8YLR|1|2|A|1236
*
8YLR|1|2|U|1249
8YLR|1|2|U|1250
8YLR|1|2|U|1251

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31