IL_8YLR_070

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8YLR|1|2|A|1346, 8YLR|1|2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_070 not in the Motif Atlas

Homologous match to IL_8C3A_462

Geometric discrepancy: 0.2924

The information below is about IL_8C3A_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25234.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8YLR|1|2|A|1345
8YLR|1|2|A|1346
8YLR|1|2|U|1347
8YLR|1|2|A|1348
*
8YLR|1|2|U|1377
8YLR|1|2|U|1378
8YLR|1|2|C|1379
8YLR|1|2|U|1380

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS9A

Chain SJ

Small ribosomal subunit protein uS10