IL_8YLR_133

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_133 not in the Motif Atlas

Homologous match to IL_8P9A_274

Geometric discrepancy: 0.1471

The information below is about IL_8P9A_274

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8YLR|1|A|A|1120
8YLR|1|A|U|1121
8YLR|1|A|U|1122
*
8YLR|1|A|A|1136
8YLR|1|A|C|1137
8YLR|1|A|U|1138

Current chains

Chain A

25S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain I

Large ribosomal subunit protein uL30A

Chain d

Large ribosomal subunit protein eL29