IL_8YLR_135
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_135 not in the Motif Atlas
- Homologous match to IL_8P9A_277
- Geometric discrepancy: 0.176
- The information below is about IL_8P9A_277
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_07396.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 3
Unit IDs
8YLR|1|A|U|1173
8YLR|1|A|G|1174
8YLR|1|A|C|1175
8YLR|1|A|C|1176
8YLR|1|A|G|1177
8YLR|1|A|G|1178
8YLR|1|A|A|1179
8YLR|1|A|A|1180
*
8YLR|1|A|U|1325
8YLR|1|A|A|1326
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL30A
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain U
- Large ribosomal subunit protein eL20A
- Chain h
- Large ribosomal subunit protein eL33A
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