IL_8YLR_148

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8YLR|1|A|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLR_148 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.2686

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8YLR|1|A|U|1501
8YLR|1|A|C|1502
8YLR|1|A|A|1503
8YLR|1|A|A|1504
8YLR|1|A|C|1505
*
8YLR|1|A|G|1513
8YLR|1|A|G|1514
8YLR|1|A|A|1515

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

Large ribosomal subunit protein uL22A

Chain T

Large ribosomal subunit protein eL19A

Chain n

Large ribosomal subunit protein eL39