IL_8YLR_173
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_173 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1303
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8YLR|1|A|U|2211
8YLR|1|A|C|2212
8YLR|1|A|A|2213
8YLR|1|A|A|2214
8YLR|1|A|A|2215
8YLR|1|A|G|2216
8YLR|1|A|U|2217
*
8YLR|1|A|A|2228
8YLR|1|A|A|2229
8YLR|1|A|C|2230
8YLR|1|A|C|2231
8YLR|1|A|A|2232
8YLR|1|A|A|2233
8YLR|1|A|G|2234
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain k
- Large ribosomal subunit protein eL36A
- Chain q
- Large ribosomal subunit protein eL42A
- Chain u
- Transfer RNA; tRNA
Coloring options: