IL_8YLR_234
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CA*UAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLR_234 not in the Motif Atlas
- Homologous match to IL_8CRE_038
- Geometric discrepancy: 0.2954
- The information below is about IL_8CRE_038
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_26793.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 16
Unit IDs
8YLR|1|A|C|969
8YLR|1|A|A|970
*
8YLR|1|A|U|1111
8YLR|1|A|A|1112
8YLR|1|A|G|1113
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain N
- Large ribosomal subunit protein eL13A
- Chain S
- Large ribosomal subunit protein eL18A
- Chain V
- Large ribosomal subunit protein eL21A
- Chain c
- Large ribosomal subunit protein uL15
- Chain d
- Large ribosomal subunit protein eL29
Coloring options: