IL_8YOO_029

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

8YOO|1|L5|C|501, 8YOO|1|L5|C|502, 8YOO|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_029 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.3019

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8YOO|1|L5|G|500
8YOO|1|L5|C|501
8YOO|1|L5|C|502
8YOO|1|L5|C|503
8YOO|1|L5|G|504
8YOO|1|L5|G|505
*
8YOO|1|L5|U|653
8YOO|1|L5|C|654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a