IL_8YOO_040

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8YOO|1|L5|G|748, 8YOO|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_040 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1639

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8YOO|1|L5|G|745
8YOO|1|L5|A|746
8YOO|1|L5|A|747
8YOO|1|L5|G|748
8YOO|1|L5|G|749
8YOO|1|L5|U|750
8YOO|1|L5|G|751
8YOO|1|L5|G|752
*
8YOO|1|L5|U|911
8YOO|1|L5|G|912
8YOO|1|L5|U|913
8YOO|1|L5|U|914
8YOO|1|L5|A|915
8YOO|1|L5|C|916
8YOO|1|L5|A|917
8YOO|1|L5|G|918
8YOO|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a