IL_8YOO_214

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

8YOO|1|S2|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_214 not in the Motif Atlas

Geometric match to IL_6WBR_001

Geometric discrepancy: 0.3645

The information below is about IL_6WBR_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8YOO|1|S2|G|535
8YOO|1|S2|A|536
8YOO|1|S2|C|537
*
8YOO|1|S2|G|546
8YOO|1|S2|G|547
8YOO|1|S2|C|548
8YOO|1|S2|C|549

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

40S ribosomal protein S30