IL_8YOP_037

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8YOP|1|L5|G|748, 8YOP|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_037 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1614

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8YOP|1|L5|G|745
8YOP|1|L5|A|746
8YOP|1|L5|A|747
8YOP|1|L5|G|748
8YOP|1|L5|G|749
8YOP|1|L5|U|750
8YOP|1|L5|G|751
8YOP|1|L5|G|752
*
8YOP|1|L5|U|911
8YOP|1|L5|G|912
8YOP|1|L5|U|913
8YOP|1|L5|U|914
8YOP|1|L5|A|915
8YOP|1|L5|C|916
8YOP|1|L5|A|917
8YOP|1|L5|G|918
8YOP|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a