IL_8YOP_088
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8YOP|1|L5|A|1960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_088 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.3062
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8YOP|1|L5|U|1957
8YOP|1|L5|A|1958
8YOP|1|L5|U|1959
8YOP|1|L5|A|1960
8YOP|1|L5|G|1961
8YOP|1|L5|A|1962
8YOP|1|L5|C|1963
8YOP|1|L5|A|1964
8YOP|1|L5|G|1965
*
8YOP|1|L5|C|2022
8YOP|1|L5|C|2023
8YOP|1|L5|G|2024
8YOP|1|L5|A|2025
8YOP|1|L5|A|2026
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LS
- 60S ribosomal protein L18a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
- Chain Ls
- Large ribosomal subunit protein uL10
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