IL_8YOP_097

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_097 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0754

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8YOP|1|L5|G|2358
8YOP|1|L5|U|2359
8YOP|1|L5|A|2360
8YOP|1|L5|G|2361
8YOP|1|L5|U|2362
8YOP|1|L5|A|2363
8YOP|1|L5|G|2364
*
8YOP|1|L5|C|3858
8YOP|1|L5|G|3859
8YOP|1|L5|A|3860
8YOP|1|L5|A|3861
8YOP|1|L5|A|3862
8YOP|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17