IL_8YOP_208
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 8YOP|1|S2|U|361, 8YOP|1|S2|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_208 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.0692
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8YOP|1|S2|U|359
8YOP|1|S2|A|360
8YOP|1|S2|U|361
8YOP|1|S2|C|362
8YOP|1|S2|A|363
8YOP|1|S2|A|364
*
8YOP|1|S2|U|396
8YOP|1|S2|G|397
8YOP|1|S2|A|398
8YOP|1|S2|C|399
8YOP|1|S2|C|400
8YOP|1|S2|A|401
8YOP|1|S2|C|402
8YOP|1|S2|G|403
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
- Chain SX
- 40S ribosomal protein S23
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