IL_8YOP_249
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8YOP|1|S2|C|1215, 8YOP|1|S2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_249 not in the Motif Atlas
- Homologous match to IL_8C3A_449
- Geometric discrepancy: 0.0781
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
8YOP|1|S2|A|1214
8YOP|1|S2|C|1215
8YOP|1|S2|C|1216
8YOP|1|S2|A|1217
*
8YOP|1|S2|U|1681
8YOP|1|S2|C|1682
8YOP|1|S2|C|1683
8YOP|1|S2|C|1684
8YOP|1|S2|U|1685
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sa
- 40S ribosomal protein S26
- Chain Sc
- 40S ribosomal protein S28
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