IL_8YOP_267
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 8YOP|1|S2|A|1580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_267 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.1788
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YOP|1|S2|G|1550
8YOP|1|S2|U|1551
8YOP|1|S2|G|1552
8YOP|1|S2|C|1553
8YOP|1|S2|C|1554
8YOP|1|S2|U|1555
8YOP|1|S2|A|1556
8YOP|1|S2|C|1557
8YOP|1|S2|C|1558
*
8YOP|1|S2|G|1577
8YOP|1|S2|U|1578
8YOP|1|S2|A|1579
8YOP|1|S2|A|1580
8YOP|1|S2|C|1581
8YOP|1|S2|C|1582
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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