IL_8YP6_032
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAGGG*UGGG
- Length
- 9 nucleotides
- Bulged bases
- 8YP6|1|a|G|645
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YP6_032 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.2891
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8YP6|1|a|C|642
8YP6|1|a|A|643
8YP6|1|a|G|644
8YP6|1|a|G|645
8YP6|1|a|G|646
*
8YP6|1|a|U|720
8YP6|1|a|G|721
8YP6|1|a|G|722
8YP6|1|a|G|723
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain f
- Small ribosomal subunit protein bS6
- Chain o
- Small ribosomal subunit protein uS15
- Chain r
- Small ribosomal subunit protein bS18B
Coloring options: