IL_8YP6_034

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGUAG*CGCAGAUA

Length

13 nucleotides

Bulged bases

8YP6|1|a|A|682

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_034 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.4322

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8YP6|1|a|U|664
8YP6|1|a|G|665
8YP6|1|a|U|666
8YP6|1|a|A|667
8YP6|1|a|G|668
*
8YP6|1|a|C|679
8YP6|1|a|G|680
8YP6|1|a|C|681
8YP6|1|a|A|682
8YP6|1|a|G|683
8YP6|1|a|A|684
8YP6|1|a|U|685
8YP6|1|a|A|686

Current chains

Chain a

16S rRNA

Nearby chains

Chain k

Small ribosomal subunit protein uS11