IL_8YP6_051

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCUG*CGAAUC

Length

10 nucleotides

Bulged bases

8YP6|1|a|U|1238, 8YP6|1|a|A|1261, 8YP6|1|a|U|1262

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_051 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.4777

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8YP6|1|a|G|1236
8YP6|1|a|C|1237
8YP6|1|a|U|1238
8YP6|1|a|G|1239
*
8YP6|1|a|C|1258
8YP6|1|a|G|1259
8YP6|1|a|A|1260
8YP6|1|a|A|1261
8YP6|1|a|U|1262
8YP6|1|a|C|1263

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14B