IL_8YP6_057

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_057 not in the Motif Atlas

Geometric match to IL_8P9A_327

Geometric discrepancy: 0.2412

The information below is about IL_8P9A_327

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8YP6|1|a|U|1407
8YP6|1|a|A|1408
8YP6|1|a|A|1409
8YP6|1|a|C|1410
*
8YP6|1|a|G|1457
8YP6|1|a|G|1458
8YP6|1|a|G|1459
8YP6|1|a|A|1460

Current chains

Chain a

16S rRNA

Nearby chains