3D structure

PDB id
8YUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.25 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
8YUO|1|a|A|1801, 8YUO|1|a|C|1816, 8YUO|1|a|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YUO_134 not in the Motif Atlas
Homologous match to IL_5J7L_313
Geometric discrepancy: 0.0687
The information below is about IL_5J7L_313
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

8YUO|1|a|U|1798
8YUO|1|a|G|1799
8YUO|1|a|C|1800
8YUO|1|a|A|1801
8YUO|1|a|A|1802
8YUO|1|a|A|1803
8YUO|1|a|C|1804
*
8YUO|1|a|G|1813
8YUO|1|a|G|1814
8YUO|1|a|A|1815
8YUO|1|a|C|1816
8YUO|1|a|G|1817
8YUO|1|a|U|1818
8YUO|1|a|A|1819
8YUO|1|a|U|1820
8YUO|1|a|A|1821

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain c
50S ribosomal protein L2

Coloring options:


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