IL_8YUO_162

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8YUO|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUO_162 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0743

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8YUO|1|a|C|2636
8YUO|1|a|U|2637
8YUO|1|a|G|2638
8YUO|1|a|A|2639
8YUO|1|a|G|2640
*
8YUO|1|a|C|2774
8YUO|1|a|G|2775
8YUO|1|a|A|2776
8YUO|1|a|G|2777
8YUO|1|a|A|2778
8YUO|1|a|U|2779
8YUO|1|a|G|2780
8YUO|1|a|A|2781
8YUO|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13