IL_8YUP_133

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8YUP|1|a|A|1801, 8YUP|1|a|C|1816, 8YUP|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUP_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0547

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8YUP|1|a|U|1798
8YUP|1|a|G|1799
8YUP|1|a|C|1800
8YUP|1|a|A|1801
8YUP|1|a|A|1802
8YUP|1|a|A|1803
8YUP|1|a|C|1804
*
8YUP|1|a|G|1813
8YUP|1|a|G|1814
8YUP|1|a|A|1815
8YUP|1|a|C|1816
8YUP|1|a|G|1817
8YUP|1|a|U|1818
8YUP|1|a|A|1819
8YUP|1|a|U|1820
8YUP|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2