IL_8YUR_133

3D structure

PDB id

8YUR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8YUR|1|a|A|1801, 8YUR|1|a|C|1816, 8YUR|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUR_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0595

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8YUR|1|a|U|1798
8YUR|1|a|G|1799
8YUR|1|a|C|1800
8YUR|1|a|A|1801
8YUR|1|a|A|1802
8YUR|1|a|A|1803
8YUR|1|a|C|1804
*
8YUR|1|a|G|1813
8YUR|1|a|G|1814
8YUR|1|a|A|1815
8YUR|1|a|C|1816
8YUR|1|a|G|1817
8YUR|1|a|U|1818
8YUR|1|a|A|1819
8YUR|1|a|U|1820
8YUR|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2