IL_8YUS_133

3D structure

PDB id

8YUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8YUS|1|a|A|1801, 8YUS|1|a|C|1816, 8YUS|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUS_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0609

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8YUS|1|a|U|1798
8YUS|1|a|G|1799
8YUS|1|a|C|1800
8YUS|1|a|A|1801
8YUS|1|a|A|1802
8YUS|1|a|A|1803
8YUS|1|a|C|1804
*
8YUS|1|a|G|1813
8YUS|1|a|G|1814
8YUS|1|a|A|1815
8YUS|1|a|C|1816
8YUS|1|a|G|1817
8YUS|1|a|U|1818
8YUS|1|a|A|1819
8YUS|1|a|U|1820
8YUS|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2