IL_8Z70_047

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8Z70|1|2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_047 not in the Motif Atlas

Homologous match to IL_8C3A_438

Geometric discrepancy: 0.0986

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8Z70|1|2|C|874
8Z70|1|2|G|875
8Z70|1|2|G|876
8Z70|1|2|G|877
8Z70|1|2|G|878
*
8Z70|1|2|C|950
8Z70|1|2|A|951
8Z70|1|2|A|952
8Z70|1|2|G|953

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain SY

Small ribosomal subunit protein uS15

Chain Se

Small ribosomal subunit protein eS26A