IL_8Z70_055

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_055 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.0961

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8Z70|1|2|G|1111
8Z70|1|2|G|1112
8Z70|1|2|A|1113
8Z70|1|2|G|1114
8Z70|1|2|U|1115
8Z70|1|2|A|1116
8Z70|1|2|U|1117
8Z70|1|2|G|1118
*
8Z70|1|2|U|1129
8Z70|1|2|G|1130
8Z70|1|2|A|1131
8Z70|1|2|A|1132
8Z70|1|2|A|1133
8Z70|1|2|C|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Sc

Small ribosomal subunit protein uS12A

Chain p

Large ribosomal subunit protein eL41A