IL_8Z70_136

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCAUCAG*CUCAAG

Length

14 nucleotides

Bulged bases

8Z70|1|A|U|1191, 8Z70|1|A|C|1192, 8Z70|1|A|C|1316, 8Z70|1|A|A|1318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_136 not in the Motif Atlas

Homologous match to IL_8C3A_054

Geometric discrepancy: 0.1924

The information below is about IL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_27086.1

Basepair signature

cWW-tWW-L-tWW-cWW-L

Number of instances in this motif group

2

Unit IDs

8Z70|1|A|C|1187
8Z70|1|A|U|1188
8Z70|1|A|C|1189
8Z70|1|A|A|1190
8Z70|1|A|U|1191
8Z70|1|A|C|1192
8Z70|1|A|A|1193
8Z70|1|A|G|1194
*
8Z70|1|A|C|1314
8Z70|1|A|U|1315
8Z70|1|A|C|1316
8Z70|1|A|A|1317
8Z70|1|A|A|1318
8Z70|1|A|G|1319

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A

Chain O

Large ribosomal subunit protein eL14A

Chain Q

Large ribosomal subunit protein uL13A

Chain U

Large ribosomal subunit protein eL20A

Chain o

Large ribosomal subunit protein eL40A