IL_8Z70_145

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_145 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1469

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8Z70|1|A|G|1444
8Z70|1|A|U|1445
8Z70|1|A|A|1446
8Z70|1|A|G|1447
8Z70|1|A|U|1448
8Z70|1|A|A|1449
8Z70|1|A|G|1450
*
8Z70|1|A|C|2354
8Z70|1|A|G|2355
8Z70|1|A|A|2356
8Z70|1|A|A|2357
8Z70|1|A|A|2358
8Z70|1|A|C|2359

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain F

Large ribosomal subunit protein uL4A

Chain R

Large ribosomal subunit protein uL22A