IL_8Z70_212

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

8Z70|1|A|C|3228, 8Z70|1|A|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_212 not in the Motif Atlas

Homologous match to IL_8P9A_353

Geometric discrepancy: 0.3303

The information below is about IL_8P9A_353

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82741.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8Z70|1|A|C|3225
8Z70|1|A|A|3226
8Z70|1|A|A|3227
8Z70|1|A|C|3228
8Z70|1|A|G|3229
*
8Z70|1|A|U|3258
8Z70|1|A|U|3259
8Z70|1|A|G|3260

Current chains

Chain A

25S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein eL6B

Chain O

Large ribosomal subunit protein eL14A

Chain Q

Large ribosomal subunit protein uL13A