IL_8Z70_218

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8Z70|1|A|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_218 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1201

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8Z70|1|A|G|3328
8Z70|1|A|U|3329
8Z70|1|A|A|3330
*
8Z70|1|A|U|3373
8Z70|1|A|U|3374
8Z70|1|A|A|3375
8Z70|1|A|A|3376
8Z70|1|A|G|3377
8Z70|1|A|C|3378

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain f

Large ribosomal subunit protein eL31A