IL_8Z71_076
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8Z71|1|2|U|1491, 8Z71|1|2|A|1516, 8Z71|1|2|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z71_076 not in the Motif Atlas
- Homologous match to IL_8P9A_449
- Geometric discrepancy: 0.4265
- The information below is about IL_8P9A_449
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22564.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Z71|1|2|G|1488
8Z71|1|2|U|1489
8Z71|1|2|C|1490
8Z71|1|2|U|1491
8Z71|1|2|A|1492
8Z71|1|2|A|1493
8Z71|1|2|C|1494
*
8Z71|1|2|G|1513
8Z71|1|2|U|1514
8Z71|1|2|A|1515
8Z71|1|2|A|1516
8Z71|1|2|U|1517
8Z71|1|2|C|1518
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
Coloring options: