IL_8Z71_143
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8Z71|1|A|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z71_143 not in the Motif Atlas
- Homologous match to IL_8P9A_287
- Geometric discrepancy: 0.1224
- The information below is about IL_8P9A_287
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
8Z71|1|A|U|1388
8Z71|1|A|G|1389
8Z71|1|A|A|1390
8Z71|1|A|C|1391
8Z71|1|A|G|1392
8Z71|1|A|A|1393
8Z71|1|A|A|1394
8Z71|1|A|G|1395
*
8Z71|1|A|U|1415
8Z71|1|A|C|1416
8Z71|1|A|G|1417
8Z71|1|A|A|1418
8Z71|1|A|A|1419
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Large ribosomal subunit protein uL4A
- Chain H
- Large ribosomal subunit protein eL6B
- Chain R
- Large ribosomal subunit protein uL22A
- Chain a
- Large ribosomal subunit protein uL24A
- Chain g
- Large ribosomal subunit protein eL32
Coloring options: