IL_8ZDB_018
3D structure
- PDB id
- 8ZDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 8ZDB|1|2|U|361, 8ZDB|1|2|C|399, 8ZDB|1|2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDB_018 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.1157
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZDB|1|2|U|359
8ZDB|1|2|A|360
8ZDB|1|2|U|361
8ZDB|1|2|C|362
8ZDB|1|2|A|363
8ZDB|1|2|A|364
*
8ZDB|1|2|U|396
8ZDB|1|2|G|397
8ZDB|1|2|A|398
8ZDB|1|2|C|399
8ZDB|1|2|C|400
8ZDB|1|2|A|401
8ZDB|1|2|C|402
8ZDB|1|2|G|403
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein eS8
- Chain L
- Small ribosomal subunit protein uS17
- Chain X
- Small ribosomal subunit protein uS12
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