IL_8ZDB_048

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8ZDB|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_048 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.2522

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8ZDB|1|2|G|952
8ZDB|1|2|C|953
8ZDB|1|2|U|954
8ZDB|1|2|A|955
8ZDB|1|2|G|956
*
8ZDB|1|2|C|967
8ZDB|1|2|U|968
8ZDB|1|2|U|969
8ZDB|1|2|G|970
8ZDB|1|2|G|971
8ZDB|1|2|A|972
8ZDB|1|2|C|973
8ZDB|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11