IL_8ZDB_058

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8ZDB|1|2|C|1215, 8ZDB|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_058 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.1151

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8ZDB|1|2|A|1214
8ZDB|1|2|C|1215
8ZDB|1|2|C|1216
8ZDB|1|2|A|1217
*
8ZDB|1|2|U|1681
8ZDB|1|2|C|1682
8ZDB|1|2|C|1683
8ZDB|1|2|C|1684
8ZDB|1|2|U|1685

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain c

Small ribosomal subunit protein eS28

Chain p

Serine/threonine-protein kinase RIO3