IL_8ZDC_015

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_015 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.3009

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8ZDC|1|2|C|188
8ZDC|1|2|U|189
8ZDC|1|2|G|190
8ZDC|1|2|A|191
8ZDC|1|2|C|192
*
8ZDC|1|2|G|207
8ZDC|1|2|G|208
8ZDC|1|2|A|209
8ZDC|1|2|U|210
8ZDC|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8